GgaEX0014591 @ galGal3
Exon Skipping
Gene
ENSGALG00000009864 | Q805B1_CHICK
Description
NA
Coordinates
chr3:23419474-23421036:-
Coord C1 exon
chr3:23420944-23421036
Coord A exon
chr3:23420152-23420292
Coord C2 exon
chr3:23419474-23419642
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTACTTTTCCATCTGTAGATA
3' ss Score
10.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGAAAAGAGGGAAGCTTGCTGAACATGAAAACGGTGCCCTGCGGGAACACATGCTGCAGATTTTGGACAAGAATTCTAGATTGGAAGAACAA
Seq A exon
ATATCTGACCTGTACAAGAGCCTGGAATGTAAAGAGATTAAAATCCAGCAGCTAGCAGAGGCTGTTAAAAAGTGTGAGAAAGAATTCAGACAGTTTACACAACTGTTTGGTAAAAATAGCAATTTGATGGTAAGCACACAG
Seq C2 exon
ACTCTTGCCAGTCATCTGGATAAGTCTGCACGACTGGAATCGCAGGTGAAACAGCTAATACAGATGGCAAACCAGCAACAAAGTAAATTAGACTTGAGACCCCTGTTTGACACAATTGAAAATGTAAAACAGAAGATTGCCCTTATGGAGACATATGATCAGCGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACATGAAAACGGTGCC
R:
AAGCGCTGATCATATGTCTCCA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]