BtaEX0037554 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012020 | TRAF5
Description
Bos taurus TNF receptor-associated factor 5 (TRAF5), mRNA. [Source:RefSeq mRNA;Acc:NM_001105340]
Coordinates
chr16:73897157-73902830:-
Coord C1 exon
chr16:73902738-73902830
Coord A exon
chr16:73898702-73898842
Coord C2 exon
chr16:73897157-73897325
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTCATATTCCTGTTATTAGATT
3' ss Score
5.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATAAACGGGGGAACCTGCAGGAACATGAGCGTTCGGCCTTACGGGACCACATGCTTCTGGTTTTAGAAAAGAACTTCCAATTAGAGGAGCAG
Seq A exon
ATTTCTGACTTATATAAGAGCCTAGAACAAAAAGAAAGCAAAATCCAGCAGCTAGCAGAAATGGTAAAGAAATTCGAAAAGGAGTTCAAGCAATTTGCACAGTTGTTTGGCAAAAATGGAAGCTTCCTCTCAAATATGCAG
Seq C2 exon
GTTCTTGCCAGTCACATTGACAAGTCTGCTTGGCTAGAAGTTCAGGTGCGTCAGTTACTACAAATGGCTAACCAGCAACAGAGTAAATTTGATCTGAAGCCTTTGGTGGAAGCAATTGATACAGTGAAACAGAAAATCACCCTGCTGGAAACCAATGACCAAAGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012020-'11-8,'11-7,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(12.1=100),PF0217613=zf-TRAF=PD(13.6=25.8)
A:
PF059116=DUF869=FE(18.5=100)
C2:
PF059116=DUF869=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGCAGGAACATGAGC
R:
GTCATTGGTTTCCAGCAGGGT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development