GgaEX0014591 @ galGal4
Exon Skipping
Gene
ENSGALG00000009864 | TRAF-5
Description
TNF receptor-associated factor 5 [Source:RefSeq peptide;Acc:NP_989550]
Coordinates
chr3:21609734-21611296:-
Coord C1 exon
chr3:21611204-21611296
Coord A exon
chr3:21610412-21610552
Coord C2 exon
chr3:21609734-21609902
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTACTTTTCCATCTGTAGATA
3' ss Score
10.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGAAAAGAGGGAAGCTTGCTGAACATGAAAACGGTGCCCTGCGGGAACACATGCTGCAGATTTTGGACAAGAATTCTAGATTGGAAGAACAA
Seq A exon
ATATCTGACCTGTACAAGAGCCTGGAATGTAAAGAGATTAAAATCCAGCAGCTAGCAGAGGCTGTTAAAAAGTGTGAGAAAGAATTCAGACAGTTTACACAACTGTTTGGTAAAAATAGCAATTTGATGGTAAGCACACAG
Seq C2 exon
ACTCTTGCCAGTCATCTGGATAAGTCTGCACGACTGGAATCGCAGGTGAAACAGCTAATACAGATGGCAAACCAGCAACAAAGTAAATTAGACTTGAGACCCCTGTTTGACACAATTGAAAATGTAAAACAGAAGATTGCCCTTATGGAGACATATGATCAGCGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACATGAAAACGGTGCC
R:
AAGCGCTGATCATATGTCTCCA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]