HsaEX6036574 @ hg19
Exon Skipping
Gene
ENSG00000082512 | TRAF5
Description
TNF receptor-associated factor 5 [Source:HGNC Symbol;Acc:12035]
Coordinates
chr1:211538718-211544812:+
Coord C1 exon
chr1:211538718-211538810
Coord A exon
chr1:211542794-211542934
Coord C2 exon
chr1:211544644-211544812
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCTCACGTTCCTGTTATTAGATT
3' ss Score
6.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATAAACGGAGGAACCTGCAGCAACATGAGCATTCAGCCTTACGGGAGCACATGCGTTTGGTTTTAGAAAAGAATGTCCAATTAGAAGAACAG
Seq A exon
ATTTCTGACTTACACAAGAGCCTAGAACAGAAAGAAAGTAAAATCCAGCAGCTAGCAGAAACTATAAAGAAACTTGAAAAGGAGTTCAAGCAGTTTGCACAGTTGTTTGGCAAAAATGGAAGCTTCCTCCCAAACATCCAG
Seq C2 exon
GTTTTTGCCAGTCACATTGACAAGTCAGCTTGGCTAGAAGCTCAAGTGCATCAATTATTACAAATGGTTAACCAGCAACAAAATAAATTTGACCTGAGACCTTTGATGGAAGCAGTTGATACAGTGAAACAGAAAATTACCCTGCTAGAAAACAATGATCAAAGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082512-'12-19,'12-18,15-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8),PF059116=DUF869=FE(11.5=100),PF086146=ATG16=FE(40.5=100),PF100464=BLOC1_2=PU(18.4=58.1)
A:
PF059116=DUF869=FE(17.6=100),PF086146=ATG16=PD(47.3=74.5),PF100464=BLOC1_2=FE(46.9=100)
C2:
PF059116=DUF869=FE(21.5=100),PF100464=BLOC1_2=PD(31.6=54.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTGCAGCAACATGAG
R:
TGATCATTGTTTTCTAGCAGGGT
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)