DreEX6100003 @ danRer10
Exon Skipping
Gene
ENSDARG00000017240 | traf5
Description
Tnf receptor-associated factor 5 [Source:ZFIN;Acc:ZDB-GENE-071120-3]
Coordinates
chr22:38359918-38364675:+
Coord C1 exon
chr22:38359918-38360010
Coord A exon
chr22:38364074-38364193
Coord C2 exon
chr22:38364510-38364675
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTACTGTTATTATCTGCAGATG
3' ss Score
9.27
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GATAAAAGGGGAAAAGTGCAGGTGCATGAAAACACAGAGTTCAGTGCACATGTCCGACTCGTCCTTGAAAGTAACACCAAACTGGAGAAACAG
Seq A exon
ATGGAGCAGCTGCAGCAGGATATGCTGGTCCAGCAGGGGGTGCTGAAGGACAAGAGTCTGGTGGTCAGCAGCCTGGACCGGGACGTCTCCCTCTGTGACAACACACTTACTACATTACAG
Seq C2 exon
AGGTCTGTGGAGGAGCAGAGGGTGCGCATCTGCAGTGTTCAGCGTGAACTGCGGGATCTGAGAGTTTTGGGCTCCGAGCTGAAAGAAGAGCTGCCCAGACTTCAGGCCTCGCTGGACTCCCTCCGTCAGCAGGTGGCCGTCACCGAAAGCCTCCGAGAACACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017240-'9-10,'9-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(13.6=25.8),PF057016=WEMBL=PU(18.1=93.5)
A:
PF057016=WEMBL=FE(24.4=100)
C2:
PF057016=WEMBL=FE(34.4=100)
Main Skipping Isoform:
ENSDART00000040550fB6787
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGGAAAAGTGCAGGTGC
R:
CAGGTGTTCTCGGAGGCTTTC
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]