GgaEX0016327 @ galGal4
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr2:30538620-30558061:+
Coord C1 exon
chr2:30538620-30540177
Coord A exon
chr2:30544317-30544571
Coord C2 exon
chr2:30557833-30558061
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTCCATTCTCTTTTCTTCAGTAC
3' ss Score
8.04
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
TCAGCAGGTACAGATTGTAGGTCAACCTATTCTACAGCAGATACAGATCCAGCAGCCTCAGCAGCAAATTATACAGGCCATTCCTCCACAGTCATTTCAGCTCCAGTCAGGGCAAACTATACAGACCATTCAGCAGCAGTCTTTGCAGAATGTTCAGCTGCAGGCAGTAAGTCCAACTCAGGTGCTCATCCGGGCTCCAACTTTAACACCATCAGGGCAGATCAGTTGGCAGACTGTACAGGTTCAGAATCTGCAAAGCCTTTCAAATCTTCAAGTTCAGAATGCTGGGTTACCCCAGCAACTCACCATTACCCCTGTGTCTTCAAGTGGTGGCACAACCATTGCCCAGATTGCTCCAGTGGCTGTTGCTGGTACCCCAATCACCCTGAATGCTGCCCAGCTTGCTTCAGTACCTAATCTTCAAACAGTAAGTGTTGCCAACCTGGGTGCTGCAGGTGTTCAAGTTCAAGGAGTTCCAGTTACCATTACCAGTGTTGCAG
Seq A exon
TACCTGAGCTTGTCAATGTCAACTCTTTTGTACGTTAATTGAACTTTCCAGAAGTGGATCACTTGCTACAAATGAACAGTGAAAGTAGGTGTTAGAAGTGAGCAGTACAGAGGATGTCCAGGAAGTGTCAGGGAAGAGATTGTGAAGAATTCAACCCATCCATTGATTCAGGTGCTCTAGCTTTGTTAGCAGAAAAAAAAGAAGTTTCTCTGTCCCTTGAGCAAACCAAAACTGATCCAACCAGCTGAGTTTCAG
Seq C2 exon
GTCAACAGCAAGGACAGGATGGAGTAAAAGTGCAGCAGGCTACCATAGCTCCTGTTACTGTAGCGGTAGGTGGCATTGCTAATGCAGGAATTGGTGCTGTTAGTCCTGATCAGATAACACAAGTGCAGCTGCAACAAGCTCAACAAGCTTCTGACCAGGAAGTGCAACCTGGCAAGAGAACAAGAAGAGTTGCCTGCTCGTGTCCTAATTGCAGAGAGGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.504 A=0.000 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000017736fB1905
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTACCCCAATCACCCTGA
R:
CAGGTTGCACTTCCTGGTCAG
Band lengths:
303-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]