GgaEX6019212 @ galGal4
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr2:30538049-30558061:+
Coord C1 exon
chr2:30538049-30538149
Coord A exon
chr2:30538620-30540177
Coord C2 exon
chr2:30557833-30558061
Length
1558 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTTTCTGGGTAGGAT
3' ss Score
10.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCAAAAGAAGGAGGAAACTATGCCCACAGAGGGAGAGAAATCTCCCGAGGCAGAGAATAACAACAATAATAATAAAAAAGGGAAAACTGGAGGCTCACAG
Seq A exon
GATTCTCAGCCTTCACCTCTCGCTTTGCTAGCAGCCACTTGCAGCAAAATAGGAACTCCTGGTGAGAACCAAGCAACTGGACAGCAGCAGATTATTATAGATCCAAATCAAGGTTTGGTGCAGCTTCAAAATCAGCCACAACAGTTAGAATTAGTAACAACTCAGCTTGCTGGAAACTCTTGGCAGCTTGTTGCTGCATCTCCTTCTGCTTCAAAGGACAATAATGTTGCTCAACAGGGATCTTCCGTTGCCTCAAGCGCACCAAGTCCCTCTAGCAGTAACAATGGAAGTGCATCTCCTACAAAAACCAAATCGGGCAATTCTTCTGCAACAACCCCTGGACAATTTCAGGTCATTCAAGTACAAAATCCAAGTGGTAGTGTCCAATATCAAGTGATACCACAGATTCAGACAACAGAAGGTCAACAAATTCAAATTAATCCTGCAAATGCTACTGGTCTACAAGATATACAGGGTCAAATTCAGCTTATTCCTGCGGGAAATAATCAAGCTATCCTCACGGCTTCAAATAGGACAGCTTCGGGGAATATTATTGCTCAAAACCTAGCAAATCAGACGGTCCCAGTCCAAATCAGGCCTGGTGTCTCCATACCACTGCAGCTGCAAACCATTCCTGGTACTCAGGCACAGGTTGTGACAACTTTGCCTATAAACATTGGTGGAGTAACCCTAGCATTGCCTGTGATAAACAACATGGCAGCTGGAGGAGGTTCAGGTCAAGTTGGCCAGTCCACAGAGGGTGGAGTTTCCAATGGAAGTCAGTTGGCATCTACACCGGTCACTTCTGCCTCTGTTAGCTCAATGCCGGACTCTCCTTCTTCATCGTCCACTTCTACGACCACTGCTTCAACGTCTCTAACTAGCAGTGACACCTTAGTAAGCTCTGCAGAAACAGGCCAGTACACAAGCACAGCAGGCAGCAGTTCAGAGCAGCCAACGGAAGAATCTCAAACAACTGCAACAGATTCTGAAGCCCAAAGCTCCAGTCAGCTTCAATCAAACGGACTACAGAATGTTCAGGATCAGTCAGGTTCCCTTCAGCAGGTACAGATTGTAGGTCAACCTATTCTACAGCAGATACAGATCCAGCAGCCTCAGCAGCAAATTATACAGGCCATTCCTCCACAGTCATTTCAGCTCCAGTCAGGGCAAACTATACAGACCATTCAGCAGCAGTCTTTGCAGAATGTTCAGCTGCAGGCAGTAAGTCCAACTCAGGTGCTCATCCGGGCTCCAACTTTAACACCATCAGGGCAGATCAGTTGGCAGACTGTACAGGTTCAGAATCTGCAAAGCCTTTCAAATCTTCAAGTTCAGAATGCTGGGTTACCCCAGCAACTCACCATTACCCCTGTGTCTTCAAGTGGTGGCACAACCATTGCCCAGATTGCTCCAGTGGCTGTTGCTGGTACCCCAATCACCCTGAATGCTGCCCAGCTTGCTTCAGTACCTAATCTTCAAACAGTAAGTGTTGCCAACCTGGGTGCTGCAGGTGTTCAAGTTCAAGGAGTTCCAGTTACCATTACCAGTGTTGCAG
Seq C2 exon
GTCAACAGCAAGGACAGGATGGAGTAAAAGTGCAGCAGGCTACCATAGCTCCTGTTACTGTAGCGGTAGGTGGCATTGCTAATGCAGGAATTGGTGCTGTTAGTCCTGATCAGATAACACAAGTGCAGCTGCAACAAGCTCAACAAGCTTCTGACCAGGAAGTGCAACCTGGCAAGAGAACAAGAAGAGTTGCCTGCTCGTGTCCTAATTGCAGAGAGGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905-'3-8,'3-1,4-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.504 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGGAGGAAACTATGCCCAC
R:
CTTCCTTCTCCCTCTCTGCAA
Band lengths:
326-1884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]