MmuEX0044481 @ mm9
Exon Skipping
Gene
ENSMUSG00000025323 | Sp4
Description
trans-acting transcription factor 4 [Source:MGI Symbol;Acc:MGI:107595]
Coordinates
chr12:119500200-119539281:-
Coord C1 exon
chr12:119539172-119539281
Coord A exon
chr12:119537111-119538665
Coord C2 exon
chr12:119500200-119500428
Length
1555 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCATTTTGGGTAGGAC
3' ss Score
7.43
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCGATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq A exon
GACTCTCACCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAGCAGATTATTATAGATCCAAGCCAAGGATTGGTGCAACTTCAGAATCAGCCACAGCAGCTAGAACTGGTGACGACGCAGCTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACGTTTCTCAGCCAGCTTCTAGTTCATCTAGTTCTTCCAGCAGTAATAACGGGAGTTCCTCTCCTACAAAAACTAAATCAGGTAATCCTTCCACCCCTAATCAATTTCAAGTCATACAAGTACAAAACCCAAGCGGTAGTGTACAGTACCAAGTGATCCCCCAACTTCAGACGGTGGAAGGCCAGCAAATTCAAATCAACCCAACTAGTAGTTCATCTCTACAGGATTTGCAGGGTCAAATTCAGCTCATTTCTGCAGGTAATAATCAAGCTATCCTCACGGCTGCTAACAGGACAGCTTCTGGGAATATCCTTGCTCAAAACCTGGCAAATCAGACAGTTCCAGTACAAATTAGACCTGGCGTTTCAATACCATTGCAATTGCAGACCCTTCCTGGTACTCAGGCTCAAGTTGTAACAACCCTACCAATTAACATTGGAGGAGTGACTTTAGCTTTGCCAGTAATAAATAACGTGACTGCTGGAGGAGGGACTGGACAAGTCGGCCAGCCTACTACTACTACTGACAGTGGGACTTCCAATGGGAATCAGTTAGTTTCTACGCCCACCACCAGCACTGCTCCCGCCAGTACTATGCCTGAATCGCCCTCCTCCTCTACTACCTGCACAACCACCGCATCAACAACTCTGACGAGCAGTGACACATTAGTGAGCTCAGCAGATACAGGCCAGTATGCAAGCACATCAGCCAGTAGTTCTGAACGCACCATTGAAGAACCACAGACACCTGCTGCTACTGAGTCTGAAGCCCAGAGCTCCAGCCAGCTTCAGTCCAACGGAATTCAGAATGCACAAGACCAGTCAAATTCCCTTCAACAAGTACAGATTGTAGGCCAGCCTATCCTGCAGCAAATCCAGATCCAGCAGCCTCAGCAGCAGATTATTCAAGCTATCCCACCACAGTCATTTCAGCTCCAGTCAGGGCAGACAATTCAGACCATCCAGCAGCAGCCTTTGCAGAATGTTCAACTTCAAGCAGTAAACCCGACTCAGGTACTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCAGCTGGCAAACTGTCCAGGTCCAGAATATTCAAAGTCTTTCAAATTTGCAAGTTCAGAATGCTGGGTTATCCCAGCAGTTAACCATCACCCCAGTGTCTTCAAGTGGTGGCACAACTCTTGCTCAGATTGCTCCTGTGGCTGTTGCTGGTGCCCCAATAACTTTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGCGTTGCCAACCTGGGTGCTGCGGGTGTTCAAGTTCAGGGAGTTCCAGTAACAATCACTAGTGTTGCAG
Seq C2 exon
GTCAACAGCAAGGACAGGATGGAGTGAAAGTCCAACAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATTGCTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACCTCTGATGCAGAGGTGCAACCTGGCAAGAGGCTCCGAAGAGTTGCCTGCTCCTGTCCTAACTGTAGGGAAGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025323_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.522 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAAGGAGGAGGAGGAGG
R:
TCCTTCTCCTTCCCTACAGTTAGG
Band lengths:
335-1890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: