BtaEX6026581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014389 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr4:30322230-30374648:+
Coord C1 exon
chr4:30322230-30322346
Coord A exon
chr4:30322869-30324420
Coord C2 exon
chr4:30374420-30374648
Length
1552 bp
Sequences
Splice sites
3' ss Seq
TACTATCCCATTTTGGGTAGGAC
3' ss Score
4.54
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCACAGGCAGCGGCTTATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACTATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq A exon
GACTCTCAGCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAACAAATTATTATAGATCCAAGCCAAGGATTGGTGCAGCTTCAAAATCAACCACAACAGCTAGAACTGGTAACAACACAACTTGCTGGGAATGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACATTTCTCAACCAGCTTCTAGTTCATCTAGTTCTTCCACCAGTAATAATGGGAGTGCATCTCCCACAAAAACTAAATCAGGTAATTCTTCTTCCCCTGGTCAGTTTCAAGTCATACAAGTACAAAATCCAAGTGGTAGTGTACAGTACCAAGTGATTCCACAACTTCAAACAGTGGAAGGTCAGCAAATTCAAATCAATCCAACTAGTAGTTCATCTCTACAGGATTTGCAGGGTCAAATTCAGCTTATTTCTGCAGGTAATAATCAAGCTATACTCACAGCTGGTAACAGGACAGCTTCTGGGAATATTCTTGCTCAAAACCTGGCAAATCAGACAGTTCCAGTCCAAATTAGACCTGGTGTTTCAATACCACTGCAGTTACAGACCCTTCCTGGTACTCAGGCTCAAGTTGTAACAACCCTACCAATTAACATTGGAGGAGTGACTTTAGCTTTGCCAGTGATAAACAGTGTGGCTGCTGGAGGAGGAACTGCACAGGTTGGCCAGCCTGCTACTACTACTGAGAGTGGGACTTCCAATGGGAGTCAGTTAGCTTCCACACCTACCACCACCACTGCTTCTGCCAGTATGCCGGAATCTCCCTCCTCCTCCACTACCTGTACAACCACTGCATCAACATCTCTGACCAGCAGTGACACGTTAGTAAGTTCAGCAGATACGGGCCAGTATGCAAGCACATCAGCCAGTAGTTCTGAACGCACCATTGAAGATTCTCAGACACCTGCTGCTACAGAGTCTGAAGCCCAGAGCTCCAGTCAGCTTCAGTCTAATGGAATACAGAATACACAGGATCAATCAAATTCTCTTCAGCAGGTGCAAATTGTAGGCCAGCCTATCTTGCAACAGATCCAGATCCAGCAGCCTCAGCAACAGATAATTCAAGCTATTCCACCCCAGTCTTTTCAGCTCCAGTCAGGGCAGACGATTCAGACCATCCAGCAGCAGCCTTTGCAGAATGTTCAACTTCAAGCAGTAAATCCGACTCAGGTGCTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCACCTGGCAAACTGTACAGGTTCAGAATATTCAGAGTCTTTCAAATTTGCAAGTTCAGAATGCTGGGTTATCCCAGCAATTAACCATCACCCCAGTGTCTTCAAGTGGTGGCACAACCCTTGCTCAGATTGCTCCTGTGGCTGTTGCTGGTGCCCCAATAACTTTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGTGTTGCCAACCTGGGTGCTGCGGGCGTTCAAGTGCAAGGAGTTCCAGTTACAATCACCAGTGTGGCAG
Seq C2 exon
GTCAGCAGCAAGGACAAGATGGAGTGAAAGTCCAACAAGCTACCATAGCTCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCAACGATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGGCTTCTGATCAAGAAGTGCAGCCTGGCAAGAGGCTTCGAAGAGTTGCCTGTTCCTGTCCTAATTGTAGGGAAGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014389-'1-5,'1-2,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.492 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAAGGAGGAGGAGGAGG
R:
TCCTTCTCCTTCCCTACAATTAGG
Band lengths:
342-1894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]