DreEX0074610 @ danRer10
Exon Skipping
Gene
ENSDARG00000005186 | sp4
Description
sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
Coordinates
chr19:2616713-2624117:+
Coord C1 exon
chr19:2616713-2616798
Coord A exon
chr19:2620414-2621090
Coord C2 exon
chr19:2623925-2624117
Length
677 bp
Sequences
Splice sites
3' ss Seq
CTCCAATCCAGCGATGGCAGCAT
3' ss Score
-7.27
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATCAAAAGAAGGAAGCCATGGCCACTGATGGGGGGAAAGCCAGTGGAGGTGATGGGGGTACGAAAGGGAAAACTTCTGGATCACAG
Seq A exon
CATCTCCAATGGAAACCAGCTGATCACGACGGTCACAACAAGCACAGCAGATTCCACAGGGAGTTCGACCTCCACCACGACCGCCACAGGAAGCGATTCGGTCGTCGTGACTTCAGCTGATGGACTATCTACGACGTCCATGGTGTCCGCCGAGAGCCCAAAGGATAATGAAGCAGATTTAACCCAATCCAACGGCCTCCAATCCACATCTGAGCAGGCCGGACAAATCCAGCAGTTCCAGATCGTGGGCCACCCGGTGCTCCAGCAGATCCAGATCCAGTCTCCGCAGCAGCAGGTGGTGCAGGGCTCCATACAGATCCAGCCCGGGCAGACTTTACAGCCGGTCCAGCAAAACCTCCAGCTGCAGGCCTTCCAGAACCCGGCGCAGGTGCTGATCCGGACGCCCACGCTCACGCCGTCGGGGCAGATCAGCTGGCAGACGGTGCAGGTGCAGAACGCAGGCATGCCCCAGCAGCTGACGCTCGCCCCGGTGGCGTCCAGCGCAGGCGGTGGGACGTTTGCTCAGATTGCTCCGCTGACGCTCGGAGGCTCACCTATCACGCTCAGCGCCGCGCAGCTGCCCGCGGGCTCAGGGGTGCAGACGGTCAACATTGCCGGTCTGGGGGCGGCTGGAGTGCAGGTGCAGGGCGTCCCGCTCACCATCACCGGTGTACAAG
Seq C2 exon
GTCAACAGCAGGGTCAGGATGGGGTCAAAGTTCAGTCCGCTCCAGTGACGGTGACCGTTGGGAACATCAGCAACGCTGTGAGTCCTGAGCAGATGGGGCAGGTCCAGAGCCCGTCCGATCAGGAGGGTCAACCCAGCAAGAGGCTGCGCAGGGTGGCCTGTTCCTGCCCCAACTGCAGAGATGGAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005186_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.329 C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAGAAGGAAGCCATGGCC
R:
CTGCCCTCTCCATCTCTGCAG
Band lengths:
278-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]