GgaEX6019212 @ galGal3
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
NA
Coordinates
chr2:30435190-30455209:+
Coord C1 exon
chr2:30435190-30435297
Coord A exon
chr2:30435768-30437325
Coord C2 exon
chr2:30454981-30455209
Length
1558 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTTTCTGGGTAGGAT
3' ss Score
10.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTGCAGATCAAAAGAAGGAGGAAACTATGCCCACAGAGGGAGAGAAATCTCCCGAGGCAGAGAATAACAACAATAATAATAAAAAAGGGAAAACTGGAGGCTCACAG
Seq A exon
GATTCTCAGCCTTCACCTCTCGCTTTGCTAGCAGCCACTTGCAGCAAAATAGGAACTCCTGGTGAGAACCAAGCAACTGGACAGCAGCAGATTATTATAGATCCAAATCAAGGTTTGGTGCAGCTTCAAAATCAGCCACAACAGTTAGAATTAGTAACAACTCAGCTTGCTGGAAACTCTTGGCAGCTTGTTGCTGCATCTCCTTCTGCTTCAAAGGACAATAATGTTGCTCAACAGGGATCTTCCGTTGCCTCAAGCGCACCAAGTCCCTCTAGCAGTAACAATGGAAGTGCATCTCCTACAAAAACCAAATCGGGCAATTCTTCTGCAACAACCCCTGGACAATTTCAGGTCATTCAAGTACAAAATCCAAGTGGTAGTGTCCAATATCAAGTGATACCACAGATTCAGACAACAGAAGGTCAACAAATTCAAATTAATCCTGCAAATGCTACTGGTCTACAAGATATACAGGGTCAAATTCAGCTTATTCCTGCGGGAAATAATCAAGCTATCCTCACGGCTTCAAATAGGACAGCTTCGGGGAATATTATTGCTCAAAACCTAGCAAATCAGACGGTCCCAGTCCAAATCAGGCCTGGTGTCTCCATACCACTGCAGCTGCAAACCATTCCTGGTACTCAGGCACAGGTTGTGACAACTTTGCCTATAAACATTGGTGGAGTAACCCTAGCATTGCCTGTGATAAACAACATGGCAGCTGGAGGAGGTTCAGGTCAAGTTGGCCAGTCCACAGAGGGTGGAGTTTCCAATGGAAGTCAGTTGGCATCTACACCGGTCACTTCTGCCTCTGTTAGCTCAATGCCGGACTCTCCTTCTTCATCGTCCACTTCTACGACCACTGCTTCAACGTCTCTAACTAGCAGTGACACCTTAGTAAGCTCTGCAGAAACAGGCCAGTACACAAGCACAGCAGGCAGCAGTTCAGAGCAGCCAACGGAAGAATCTCAAACAACTGCAACAGATTCTGAAGCCCAAAGCTCCAGTCAGCTTCAATCAAACGGACTACAGAATGTTCAGGATCAGTCAGGTTCCCTTCAGCAGGTACAGATTGTAGGTCAACCTATTCTACAGCAGATACAGATCCAGCAGCCTCAGCAGCAAATTATACAGGCCATTCCTCCACAGTCATTTCAGCTCCAGTCAGGGCAAACTATACAGACCATTCAGCAGCAGTCTTTGCAGAATGTTCAGCTGCAGGCAGTAAGTCCAACTCAGGTGCTCATCCGGGCTCCAACTTTAACACCATCAGGGCAGATCAGTTGGCAGACTGTACAGGTTCAGAATCTGCAAAGCCTTTCAAATCTTCAAGTTCAGAATGCTGGGTTACCCCAGCAACTCACCATTACCCCTGTGTCTTCAAGTGGTGGCACAACCATTGCCCAGATTGCTCCAGTGGCTGTTGCTGGTACCCCAATCACCCTGAATGCTGCCCAGCTTGCTTCAGTACCTAATCTTCAAACAGTAAGTGTTGCCAACCTGGGTGCTGCAGGTGTTCAAGTTCAAGGAGTTCCAGTTACCATTACCAGTGTTGCAG
Seq C2 exon
GTCAACAGCAAGGACAGGATGGAGTAAAAGTGCAGCAGGCTACCATAGCTCCTGTTACTGTAGCGGTAGGTGGCATTGCTAATGCAGGAATTGGTGCTGTTAGTCCTGATCAGATAACACAAGTGCAGCTGCAACAAGCTCAACAAGCTTCTGACCAGGAAGTGCAACCTGGCAAGAGAACAAGAAGAGTTGCCTGCTCGTGTCCTAATTGCAGAGAGGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905-'2-5,'2-1,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.500 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATCAAAAGAAGGAGGAA
R:
CTTCCTTCTCCCTCTCTGCAA
Band lengths:
335-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]