GgaEX0016326 @ galGal3
Exon Skipping
Gene
ENSGALG00000010905 | SP4
Description
NA
Coordinates
chr2:30434485-30437325:+
Coord C1 exon
chr2:30434485-30434585
Coord A exon
chr2:30435197-30435297
Coord C2 exon
chr2:30435768-30437325
Length
101 bp
Sequences
Splice sites
3' ss Seq
TACACTTGATATTTTTGCAGATC
3' ss Score
7.68
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCATTCCGTCCGCTACCCCCACCCCACCCTCCGCCTCCTCCTCCTCCTTCTCCTCCCCCCTAGAGCGGCGCCTCAGCGGGGCATTAATGCGGGATGAGCG
Seq A exon
ATCAAAAGAAGGAGGAAACTATGCCCACAGAGGGAGAGAAATCTCCCGAGGCAGAGAATAACAACAATAATAATAAAAAAGGGAAAACTGGAGGCTCACAG
Seq C2 exon
GATTCTCAGCCTTCACCTCTCGCTTTGCTAGCAGCCACTTGCAGCAAAATAGGAACTCCTGGTGAGAACCAAGCAACTGGACAGCAGCAGATTATTATAGATCCAAATCAAGGTTTGGTGCAGCTTCAAAATCAGCCACAACAGTTAGAATTAGTAACAACTCAGCTTGCTGGAAACTCTTGGCAGCTTGTTGCTGCATCTCCTTCTGCTTCAAAGGACAATAATGTTGCTCAACAGGGATCTTCCGTTGCCTCAAGCGCACCAAGTCCCTCTAGCAGTAACAATGGAAGTGCATCTCCTACAAAAACCAAATCGGGCAATTCTTCTGCAACAACCCCTGGACAATTTCAGGTCATTCAAGTACAAAATCCAAGTGGTAGTGTCCAATATCAAGTGATACCACAGATTCAGACAACAGAAGGTCAACAAATTCAAATTAATCCTGCAAATGCTACTGGTCTACAAGATATACAGGGTCAAATTCAGCTTATTCCTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010905-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTCCTCCTTCTCCTCC
R:
GCCAAGAGTTTCCAGCAAGCT
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]