DreEX6071464 @ danRer10
Exon Skipping
Gene
ENSDARG00000005186 | sp4
Description
sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
Coordinates
chr19:2615891-2620379:+
Coord C1 exon
chr19:2615891-2615918
Coord A exon
chr19:2616713-2616798
Coord C2 exon
chr19:2619683-2620379
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGTTGTTGTTGCAGATC
3' ss Score
10.65
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
AAAAAAGTGAATTTCGGAGAAATGTCGT
Seq A exon
ATCAAAAGAAGGAAGCCATGGCCACTGATGGGGGGAAAGCCAGTGGAGGTGATGGGGGTACGAAAGGGAAAACTTCTGGATCACAG
Seq C2 exon
GATGCACAGCCGTCTCCTCTTGCATTGCTTGCAGCGACGTGCAGTAAAATCGGAGGTGTTGGCGCTGAGGGTCAGGCGGCTGCACAACAGCAGATAATAATCGACCCGAGCCAAGGTCTGCTTCAGCTGCAGAACCCCACACAGCAGCTGGAGCTGGTCCCGGCACAGCTCACCGGAAACGGCTGGCAGATCATCGCCACCTCCCCTGCAACCGCAACCAAGGACAGCATTCAACAGGCTGGCGCTAATGCAGCGTCCAGCGAAGCCGCAGCCGGCCGGAAAGTCAAGGCCGTCGGCTCTAATAATGCAGCGCAGCAGCAGTTTCAGATCATACAGGTGCAGAACCTGCCCAACTCGTCCGGCGGGATTCAGTATCAGGTCATCCCGCATCTTCAAACCGCTGACGGACAGCAGATCCAAATAAGCCCCAGCAACCCCGCAGCCTTAAGCGTTCAGCCCGAACAGATCCAGCTCATTTCCACCGGAAACAACCAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005186-'0-1,'0-0,4-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=1.000 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]