BtaEX6026582 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014389 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr4:30321664-30324420:+
Coord C1 exon
chr4:30321664-30321801
Coord A exon
chr4:30322230-30322346
Coord C2 exon
chr4:30322869-30324420
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGGGGGGGGGTTTGTTGCAGATC
3' ss Score
4.11
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCTGTGCCAGCTACAGCCTCCTCCGAGCCACCGCGGGCGGGCGGGACCGGCCTCTCCTCCCGCCTCGCCCCCACCCCCACCCACCTCTATCCCAGTGTCTCCGTCTGAGGGTTTGTCCTGTTAATGCGGGATGAGCG
Seq A exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCACAGGCAGCGGCTTATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACTATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq C2 exon
GACTCTCAGCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAACAAATTATTATAGATCCAAGCCAAGGATTGGTGCAGCTTCAAAATCAACCACAACAGCTAGAACTGGTAACAACACAACTTGCTGGGAATGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACATTTCTCAACCAGCTTCTAGTTCATCTAGTTCTTCCACCAGTAATAATGGGAGTGCATCTCCCACAAAAACTAAATCAGGTAATTCTTCTTCCCCTGGTCAGTTTCAAGTCATACAAGTACAAAATCCAAGTGGTAGTGTACAGTACCAAGTGATTCCACAACTTCAAACAGTGGAAGGTCAGCAAATTCAAATCAATCCAACTAGTAGTTCATCTCTACAGGATTTGCAGGGTCAAATTCAGCTTATTTCTGCAGGTAATAATCAAGCTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014389-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.492
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACCTCTATCCCAGTGT
R:
ACAAGTTGCCAAGCATTCCCA
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]