RnoEX0084964 @ rn6
Exon Skipping
Gene
ENSRNOG00000005472 | Sp4
Description
Sp4 transcription factor [Source:RGD Symbol;Acc:3741]
Coordinates
chr6:146193107-146195819:-
Coord C1 exon
chr6:146195700-146195819
Coord A exon
chr6:146195175-146195284
Coord C2 exon
chr6:146193107-146194664
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGGTGGTGGGGTTGTTGCAGATC
3' ss Score
4.9
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCTCCTCCGAGCCACCGCGGGCGGGCGGGACCGGCCTCTCCTCCCGCCTCGCCCCCACCCCCACCCACCTCTATCCCAGTGTCTCTGAGAGGGTTTGTCCTGTTAATGCGGGATGAGCG
Seq A exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCAATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq C2 exon
GACTCTCAGCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAGCAGATTATTATAGATCCAAGCCAAGGATTGGTGCAACTTCAGAATCAACCACAGCAGCTAGAACTGGTGACAACGCAGCTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACGTTTCTCAGCCAGCTTCTAGTTCATCTAGTTCTTCCAGCAGTAATAACGGGAGTTCCTCTCCTACAAAAACTAAATCAGGTAATCCTTCCACCCCTAATCAATTTCAAGTCATACAAGTACAGAATCCAAGTGGTAGTGTACAGTACCAAGTGATCCCCCAACTTCAGACGGTGGAAGGTCAGCAAATTCAAATCAATCCAACTAGTAGTTCATCTCTACAGGATTTGCAGGGTCAAATTCAACTCATTTCTGCAGGTAATAATCAAGCTATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005472_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.525
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACCTCTATCCCAGTGT
R:
CAAGTTGCCAAGCGTTTCCAG
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]