RnoEX0084965 @ rn6
Exon Skipping
Gene
ENSRNOG00000005472 | Sp4
Description
Sp4 transcription factor [Source:RGD Symbol;Acc:3741]
Coordinates
chr6:146145845-146195284:-
Coord C1 exon
chr6:146195175-146195284
Coord A exon
chr6:146194361-146194664
Coord C2 exon
chr6:146145845-146146044
Length
304 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCATTTTGGGTAGGAC
3' ss Score
7.43
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCAATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq A exon
GACTCTCAGCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAGCAGATTATTATAGATCCAAGCCAAGGATTGGTGCAACTTCAGAATCAACCACAGCAGCTAGAACTGGTGACAACGCAGCTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACGTTTCTCAGCCAGCTTCTAGTTCATCTAGTTCTTCCAGCAGTAATAACGGGAGTTCCTCTCCTACAAAAACTAAATCAG
Seq C2 exon
GGGCAGCAGTGAACCAGGAAAGAAAAAGCAGCATGTTTGCCACATTGAAGGGTGTGGGAAAGTGTATGGCAAGACTTCTCACCTACGAGCACATCTCCGCTGGCACACTGGAGAACGGCCTTTCATATGCAACTGGATGTTTTGTGGCAAAAGATTCACCAGGAGTGATGAGCTTCAGAGGCACAGAAGGACCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005472_MULTIEX1-2/5=1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.525 C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=41.2),PF134651=zf-H2C2_2=PU(41.7=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGAAGAAGGAGGAGGAGGA
R:
CTGTGTGGGTCCTTCTGTGC
Band lengths:
310-614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]