MmuEX0044481 @ mm10
Exon Skipping
Gene
ENSMUSG00000025323 | Sp4
Description
trans-acting transcription factor 4 [Source:MGI Symbol;Acc:MGI:107595]
Coordinates
chr12:118261727-118300808:-
Coord C1 exon
chr12:118300699-118300808
Coord A exon
chr12:118299889-118300192
Coord C2 exon
chr12:118261727-118261955
Length
304 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCATTTTGGGTAGGAC
3' ss Score
7.43
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCGATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
Seq A exon
GACTCTCAGCCCTCTCCTCTGGCTTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAGCAGATTATTATAGATCCAAGCCAAGGATTGGTGCAACTTCAGAATCAGCCACAGCAGCTAGAACTGGTGACGACGCAGCTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACGTTTCTCAGCCAGCTTCTAGTTCATCTAGTTCTTCCAGCAGTAATAACGGGAGTTCCTCTCCTACAAAAACTAAATCAG
Seq C2 exon
GTCAACAGCAAGGACAGGATGGAGTGAAAGTCCAACAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATTGCTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGACCTCTGATGCAGAGGTGCAACCTGGCAAGAGGCTCCGAAGAGTTGCCTGCTCCTGTCCTAACTGTAGGGAAGGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025323_MULTIEX1-2/4=1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.522 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAAGGAGGAGGAGGAGG
R:
TCCTTCTCCTTCCCTACAGTTAGG
Band lengths:
335-639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types