GgaEX0016352 @ galGal3
Exon Skipping
Gene
ENSGALG00000010930 | STK39
Description
NA
Coordinates
chr7:20566200-20571741:+
Coord C1 exon
chr7:20566200-20566313
Coord A exon
chr7:20567156-20567276
Coord C2 exon
chr7:20571633-20571741
Length
121 bp
Sequences
Splice sites
3' ss Seq
CGCTCTCTTCTGTTCCACAGGTT
3' ss Score
11.57
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
GGGAGTGGTGCTACAGCAGTTGTGCAGGCAGCATTATGCAAACCCCGGCAAGAGCGTGTAGCAATAAAGAGGATCAACTTAGAAAAATGCCAAACCAGTATGGATGAGTTACTT
Seq A exon
GTTATACTTCTGCCTAGAGACTGTGGGCTTTTTCTAATGCAGAAATTCCTGCCTCTGAAGGAAATGATCTCCTCAGCAGGGAATTGCCAGTGCAAAAGATATCTTGAATTTGATACAGAGG
Seq C2 exon
AAAGAAATTCAAGCAATGAGTCAATGCAATCACCCCAATGTGGTGACCTATTACACGTCGTTTGTGGTGAAGGATGAGCTTTGGCTGGTTATGAAGCTGCTAAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(13.8=97.4)
A:
NO
C2:
PF0006920=Pkinase=FE(13.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCAAACCCCGGCAAGAG
R:
ACTTAGCAGCTTCATAACCAGCC
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event