GgaEX0016352 @ galGal4
Exon Skipping
Gene
ENSGALG00000010930 | STK39
Description
serine threonine kinase 39 [Source:HGNC Symbol;Acc:HGNC:17717]
Coordinates
chr7:18595546-18601086:+
Coord C1 exon
chr7:18595546-18595658
Coord A exon
chr7:18596501-18596621
Coord C2 exon
chr7:18600978-18601086
Length
121 bp
Sequences
Splice sites
3' ss Seq
CGCTCTCTTCTGTTCCACAGGTT
3' ss Score
11.57
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
GGAGTGGTGCTACAGCAGTTGTGCAGGCAGCATTATGCAAACCCCGGCAAGAGCGTGTAGCAATAAAGAGGATCAACTTAGAAAAATGCCAAACCAGTATGGATGAGTTACTT
Seq A exon
GTTATACTTCTGCCTAGAGACTGTGGGCTTTTTCTAATGCAGAAATTCCTGCCTCTGAAGGAAATGATCTCCTCAGCAGGGAATTGCCAGTGCAAAAGATATCTTGAATTTGATACAGAGG
Seq C2 exon
AAAGAAATTCAAGCAATGAGTCAATGCAATCACCCCAATGTGGTGACCTATTACACGTCGTTTGTGGTGAAGGATGAGCTTTGGCTGGTTATGAAGCTGCTAAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
NO
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Inclusion Isoform:
ENSGALT00000017779fB1907
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCAAACCCCGGCAAGAG
R:
ACTTAGCAGCTTCATAACCAGCC
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]