GgaEX0016436 @ galGal3
Exon Skipping
Gene
ENSGALG00000010971 | CSRNP3
Description
NA
Coordinates
chr7:21210371-21221607:-
Coord C1 exon
chr7:21221424-21221607
Coord A exon
chr7:21210717-21210755
Coord C2 exon
chr7:21210371-21210630
Length
39 bp
Sequences
Splice sites
3' ss Seq
AACTCTTATCATCTCTTTAGACT
3' ss Score
7.29
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTTCCTCTTACAGGTGCATGTGACAGCATTGCAGCAATGAGCGGAATTTTGAAGAGGAAGTTTGAAGAAGTTGATGGCTCCTCACCTTGCTCCTCTGTACGGGAATCAGACGATGACATTTCTAGCAGTGAAAGTGCTGACAGTGGTGATAGTGTCAATCCATCTACTTCTAATCACTTTACCC
Seq A exon
ACTGCACTTCCCCCTGAATGGTAGAGTGTACATGTTAAG
Seq C2 exon
CTTCTTCGATCCTGAAGAGAGAAAAGCGGAAGAGAACAAAAAATGTCCATTTTAACTGTGTTACTGTGTATTACTTCACGAGAAGGCAAGGCTTCACCAGTGTTCCCAGCCAAGGGGGAAGCACGCTGGGAATGTCCACTCGCCACAACAGTGTGCGCCAGTACACGCTTGGAGAGTTTGCAATGGAGCAGGAGAGGCTTCACCGGGAGATGCTGCGGGAACATCTAAGAGAAGAAAAACTCAATTCTCTAAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010971-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=0.600 C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTCTGTACGGGAATCA
R:
TCCGCTTTTCTCTCTTCAGGA
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]