GgaEX6042516 @ galGal3
Exon Skipping
Gene
ENSGALG00000010971 | CSRNP3
Description
NA
Coordinates
chr7:21206226-21221607:-
Coord C1 exon
chr7:21221424-21221607
Coord A exon
chr7:21210371-21210630
Coord C2 exon
chr7:21206226-21206522
Length
260 bp
Sequences
Splice sites
3' ss Seq
GTAATCTGTATCTGTTCCAGCTT
3' ss Score
7.85
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTCCTCTTACAGGTGCATGTGACAGCATTGCAGCAATGAGCGGAATTTTGAAGAGGAAGTTTGAAGAAGTTGATGGCTCCTCACCTTGCTCCTCTGTACGGGAATCAGACGATGACATTTCTAGCAGTGAAAGTGCTGACAGTGGTGATAGTGTCAATCCATCTACTTCTAATCACTTTACCC
Seq A exon
CTTCTTCGATCCTGAAGAGAGAAAAGCGGAAGAGAACAAAAAATGTCCATTTTAACTGTGTTACTGTGTATTACTTCACGAGAAGGCAAGGCTTCACCAGTGTTCCCAGCCAAGGGGGAAGCACGCTGGGAATGTCCACTCGCCACAACAGTGTGCGCCAGTACACGCTTGGAGAGTTTGCAATGGAGCAGGAGAGGCTTCACCGGGAGATGCTGCGGGAACATCTAAGAGAAGAAAAACTCAATTCTCTAAAATTAAAG
Seq C2 exon
ATGACAAAGAATGGTACAGTGGAATCTGAAGAGGCTAATACATTGACACTGGATGACATTTCTGATGATGATATTGATCTGGACAACACTGAAGTAGATGAGTATTTCTTTCTACAACCCCTGCCAACAAAAAAGCGAAGGGCACTGCTGCGAGCTTCTGGAGTGAAGAAGATTGACGTGGAAGAAAAACATGAGCTACGGGCCATCCGGCTGTCCAGAGAGGATTGTGGCTGTGACTGCCGTGTGTTTTGTGATCCAGAAACTTGCACTTGCAGTCTTGCAGGCATAAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010971-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=0.414 C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTCTGTACGGGAATCA
R:
GATGGCCCGTAGCTCATGTTT
Band lengths:
304-564
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002634; ELM sequence: SSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]