HsaEX1010003 @ hg38
Exon Skipping
Gene
ENSG00000178662 | CSRNP3
Description
cysteine and serine rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
Coordinates
chr2:165595043-165676608:+
Coord C1 exon
chr2:165595043-165595213
Coord A exon
chr2:165657761-165658020
Coord C2 exon
chr2:165676312-165676608
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTCTTTCTCTTTCAGCTT
3' ss Score
11.68
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTACATGTGACAGCACTGCAGCGATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCACCCTGCTCCTCTGTGAGGGAATCAGATGATGAAGTTTCCAGCAGTGAAAGTGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAGTCATTTTACCC
Seq A exon
CTTCCTCCATTCTCAAAAGGGAGAAACGACTGAGGACAAAGAATGTACATTTTAGTTGTGTCACCGTGTACTACTTCACCAGGAGGCAAGGCTTCACAAGTGTGCCCAGTCAAGGGGGAAGCACCCTGGGGATGTCCAGCCGCCATAACAGCGTGCGCCAGTACACTCTTGGCGAGTTTGCAAGGGAGCAGGAGAGGCTCCACCGGGAGATGTTGAGAGAACACCTTAGGGAGGAAAAGCTGAACTCCTTAAAACTAAAG
Seq C2 exon
ATGACTAAGAATGGCACAGTAGAATCAGAAGAAGCCAGCACTCTTACACTGGATGACATTTCTGATGATGACATTGACCTGGACAACACAGAGGTAGATGAGTACTTCTTCCTACAACCTTTGCCAACAAAAAAACGAAGAGCTCTGCTGCGTGCCTCTGGAGTGAAAAAGATTGACGTGGAAGAAAAGCACGAACTCCGAGCCATCCGCCTCTCACGAGAGGACTGTGGCTGTGACTGCCGAGTGTTCTGTGATCCAGACACGTGCACCTGCAGCCTGGCTGGCATTAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178662-'18-31,'18-29,21-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=0.424 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000314499fB13161
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGGACAGTGTCAATCCA
R:
GGATCACAGAACACTCGGCAG
Band lengths:
300-560
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002634; ELM sequence: SSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains