BtaEX6009404 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039091 | CSRNP3
Description
Bos taurus cysteine-serine-rich nuclear protein 3 (CSRNP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076244]
Coordinates
chr2:30716354-30792101:-
Coord C1 exon
chr2:30791931-30792101
Coord A exon
chr2:30734516-30734775
Coord C2 exon
chr2:30716354-30717500
Length
260 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCTTTCCTTTTCAGCTT
3' ss Score
10.9
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTACATGTGACAGCGCTGCAGCGATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCGCCCTGCTCCTCTGTGCGGGAATCAGATGATGAAGTTTCCAGCAGTGAAAGCGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAATCATTTTCCCC
Seq A exon
CTTCCTCCATCCTCAAAAGAGAGAAGCGGCTGAGGACCAAGAATGTGCATTTCAGTTGCGTCACTGTGTACTACTTCACCAGGAGGCAGGGCTTCACGAGTGTGCCCAGCCAGGGCGGCAGCACCCTGGGCATGTCCAGCCGCCACAACAGCGTGCGCCAGTACACCCTGGGCGAATTTGCCAGAGAGCAGGAGAGGCTCCACCGTGAGATGCTGAGAGAACACCTCAGGGAGGAAAAACTGAACTCTCTAAAGCTAAAG
Seq C2 exon
ATGACAAAGAATGGCACCGTGGAATCTGAAGAAGCGAGCACTCTTACAGTGGATGACATTTCTGATGATGATATTGATTTAGACAATACCGAGGTGGATGAGTACTTCTTTCTTCAACCCCTGCCAACAAAAAAACGAAGAGCACTGCTGCGGGCCTCTGGAGTTAAAAAGATTGATGTGGAGGAAAAGCATGAGCTGAGGGCCATCCGCCTGTCTCGAGAGGACTGTGGTTGTGACTGCCGGGTGTTCTGTGATCCAGAAACATGTACCTGCAGCCTGGCAGGCATTAAGTGTCAGGTAAGGATTGGGATTTCAGGGAACCCAAAGGCAAGACATTATACACTACCCACTAAAGAGGCAGTTGTGTTACATATAATGAAGTTTCCCACACGTGGAAAAAACTCTGAAGCAAGGCAAGACACATGATTCAAGAAGAGAGAAATACTAATTCAATGACATGAGTATATGTAATATATATACTTATACATAATATATATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039091-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=0.414 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGGACAGTGTCAATCCA
R:
GATCACAGAACACCCGGCAG
Band lengths:
299-559
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002634; ELM sequence: SSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]