MmuEX0012974 @ mm9
Exon Skipping
Gene
ENSMUSG00000044647 | Csrnp3
Description
cysteine-serine-rich nuclear protein 3 [Source:MGI Symbol;Acc:MGI:1925021]
Coordinates
chr2:65787016-65857793:+
Coord C1 exon
chr2:65787016-65787186
Coord A exon
chr2:65840360-65840619
Coord C2 exon
chr2:65857497-65857793
Length
260 bp
Sequences
Splice sites
3' ss Seq
CCAGCTTCTCTCTCTTCCAGCTT
3' ss Score
10.23
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTACATGTGACAACGCCGCAGCTATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATGTGGACGCCTCCTCACCATGCTCCTCTGCTCGGGAATCGGATGATGAAGTCTCCAGCAGCGAAAGTGCTGACAGCGGGGATAGCGTCAATCCATCCACCTCAAATCACTTCACCC
Seq A exon
CTTCCTCCATCCTGAAAAGGGAGAAACGGCTGAGGACGAAGAATGTACACTTCAGCTGTGTCACCGTGTACTACTTCACCAGGAGGCAGGGCTTCACTAGTGTGCCCAGCCAGGGTGGCAGCACTCTGGGGATGTCCAGTCGTCACAACAGCGTGCGCCAGTACACCCTGGGCGAGTTTGCGCGAGAGCAGGAGCGCCTGCACCGGGAGATGCTGAGAGAACACCTCCGGGAGGAGAAACTCAACTCTCTCAAACTAAAG
Seq C2 exon
ATGACTAAGAATGGCACTGTAGAGTCTGAGGAAGCTAGCACCCTGACCGTGGATGACATTTCCGATGACGATATTGATCTGGACAACACCGAAGTGGACGAATACTTCTTCCTACAACCCCTGCCCACAAAAAAGCGGAGAGCTCTGCTGCGCGCCTCGGGGGTGAAGAAGATCGACGTTGACGAGAAGCACGAACTGCGGGCCATCCGCCTTTCTCGGGAGGACTGTGGCTGTGACTGCAGAGTGTTCTGTGATCCAGAAACCTGTACCTGCAGCCTGGCAGGCATTAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044647-'10-12,'10-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=0.420 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCGAAGATGTGGACGCC
R:
TCGATCTTCTTCACCCCCGAG
Band lengths:
303-563
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002634; ELM sequence: SSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: