GgaEX0016576 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19505935-19509628:+
Coord C1 exon
chr7:19505935-19506069
Coord A exon
chr7:19507388-19507453
Coord C2 exon
chr7:19509522-19509628
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATTTTCTTTAAGCTA
3' ss Score
7.58
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATTATTCCATTATATTACTGATCAAAGGAGGAAATCTCTCCAGTACCAACACCTATCAAGAGCTGGTCAGAAAAACATATGGCTTTTTAGGTTATCTAATACTTTCAACTCTTCAGTTTTTATATCCATTTATTG
Seq A exon
CTATGATTAGTTACAACATAATAACTGGAGACACTTTAACTAAAGTGTTCCTGAGAATTCCTGGAG
Seq C2 exon
TTGGATCAGAAAATGTGCTTACTGATCGTCGCTTCATAATTCTTTTTACCACCATCATCTTTACCTTGCCTTTATCTTTATATCGTGACATAGCAAGATTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(11.6=100)
A:
PF0149013=Aa_trans=FE(5.7=100)
C2:
PF0149013=Aa_trans=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAAATCTCTCCAGTACCA
R:
GGCAAGGTAAAGATGATGGTGGT
Band lengths:
180-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]