MmuEX0043236 @ mm10
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65350038-65358188:-
Coord C1 exon
chr2:65358054-65358188
Coord A exon
chr2:65355324-65355389
Coord C2 exon
chr2:65350038-65350117
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCCTGTGCTTTCAGCTA
3' ss Score
9.16
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTTCTCCCTAGTTTTATTGATAAAAGGAGGAGCCCTCTCTGGAACAGACTCCTACCAGTCTTTGGTTAACAAGACCTTTGGCTTTCCCGGGTACCTGCTGCTCTCTACCCTACAGTTTATGTACCCTTTCATAG
Seq A exon
CTATGATAAGTTACAACATAATAACTGGAGATACTTTGAGCAAAGTTTTTCAAAGACTCCCAGGAG
Seq C2 exon
ATCTCTTTCATCTCTACAATTTTAACAACTGTAATTCTTGGAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(12.9=97.8)
A:
PF0149013=Aa_trans=FE(12.6=100)
C2:
PF0149013=Aa_trans=PD(14.3=92.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGACTCCTACCAGTC
R:
TTTGGTCCCAAGGAAATGGCC
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types