GgaEX0016645 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20660038-20662265:+
Coord C1 exon
chr7:20660038-20660136
Coord A exon
chr7:20661127-20661265
Coord C2 exon
chr7:20662196-20662265
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTCTTTTATTTTAGTCA
3' ss Score
8.94
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TCCTCAGGTACTTGGAAAATAATACTGAACTGGAAAATTCACTGAAAGATATTCAAATGCCCTCAAAAAAACTTGGCTCCATTACTGTAGGAGGATACA
Seq A exon
TCACATTTTTACTAGGGCTAAAGAAATCTTCCAGGAAAGATGGAGGTTTAAAGATGTTCTTCATGCTATCAGTTGTGTATTCATCTTTTTATTCTTCTTTGTTCTTACTACTTCATCTCATCAGGGTAAAAACTTCTGG
Seq C2 exon
ACCTGTGGTATCAAATGATATTGCCTCCCCATTTGGATTCATCAAAGAAGTACCCTCTGCTCCTTGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018100fB1949
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAGGTACTTGGAAAATAATACT
R:
ACTTCAAGGAGCAGAGGGTACT
Band lengths:
169-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]