GgaEX0016646 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20660038-20664557:+
Coord C1 exon
chr7:20660038-20660136
Coord A exon
chr7:20662196-20662265
Coord C2 exon
chr7:20664363-20664557
Length
70 bp
Sequences
Splice sites
3' ss Seq
GTTGCTCTCTTCCCTTCTAGACC
3' ss Score
10.85
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
Exon sequences
Seq C1 exon
TCCTCAGGTACTTGGAAAATAATACTGAACTGGAAAATTCACTGAAAGATATTCAAATGCCCTCAAAAAAACTTGGCTCCATTACTGTAGGAGGATACA
Seq A exon
ACCTGTGGTATCAAATGATATTGCCTCCCCATTTGGATTCATCAAAGAAGTACCCTCTGCTCCTTGAAGT
Seq C2 exon
GTATGCAGGACCCTGTAGTCAGAAAGTAGATCATGTATTCCGGATTAACTGGGCTACGTACCTTGCCAGTACAGAGCAGATCATTGTGGCCAGCTTTGATGGCAGAGGAAGTGGGTACCAGGGGGATGAGATCATGCATGCAATAAACCGAAGACTGGGAACTTATGAAGTGGAAGATCAGATTTCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.0=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCATTACTGTAGGAGGA
R:
GCATGCATGATCTCATCCCCC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]