RnoEX0029638 @ rn6
Exon Skipping
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48312339-48317104:-
Coord C1 exon
chr3:48317006-48317104
Coord A exon
chr3:48314483-48314552
Coord C2 exon
chr3:48312339-48312533
Length
70 bp
Sequences
Splice sites
3' ss Seq
TAATCTTTTTGCTTGTTTAGGAT
3' ss Score
9.23
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
AGCTGAGAGTCCTGGAGGACAATTCTGCTTTGGATAAAATGCTGCAAGATGTCCAAATGCCTTCAAAAAAATTGGACTTCATTGTTCTGAATGAAACAA
Seq A exon
GATTTTGGTATCAAATGATCTTACCTCCTCATTTTGATAAATCCAAGAAATACCCTCTACTAATAGATGT
Seq C2 exon
ATATGCAGGTCCCTGTAGTCAAAAAGCAGATGCTGCCTTCAGACTCAACTGGGCCACTTACCTTGCAAGCACAGAAAACATCATAGTAGCTAGCTTTGATGGCAGAGGAAGTGGTTACCAAGGAGATAAGATCATGCATGCAATCAACAAAAGACTTGGAACACTGGAAGTTGAAGATCAAATTGAAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-'23-26,'23-25,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.4=80.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAAGATGTCCAAATGCC
R:
TGGTAACCACTTCCTCTGCCA
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]