DreEX6097907 @ danRer10
Exon Skipping
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11605772-11606306:-
Coord C1 exon
chr22:11606208-11606306
Coord A exon
chr22:11606054-11606123
Coord C2 exon
chr22:11605772-11605966
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCGTTTCCCCTCAGACC
3' ss Score
10.99
5' ss Seq
CGTGTAAGC
5' ss Score
5.25
Exon sequences
Seq C1 exon
AGTTAAGAGTTCTTGAAAACAACAGCGTACTGGAACATAAACTGCAGGAAATCGCAATGCCATCAAATATGTACGGCAAGCTGAAGATCGGAGAGTTCG
Seq A exon
ACCTCTGGTACCAGATGATTCTGCCTCCCAGATTCGACAAATCCAAAAAATATCCTCTTCTTATTGACGT
Seq C2 exon
ATACGCTGGGCCCTGCAGTCAGAAGTCAGATTTCCGCTTCAGGGTGGGTTGGTCCACATATTTGGCCAGCACTGAGAGGGTGATCGTCGCCAGCTTTGATGGGAGAGGAAGTGGTTACCAAGGAGACCAAATCATGCATGCCCTCTACAAACGACTCGGAACTTACGAAGTCGAGGATCAGATAACTGCGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(26.3=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGCTGAAGATCGGAGAG
R:
GTCGTTTGTAGAGGGCATGCA
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]