HsaEX0024869 @ hg38
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162188169-162194748:-
Coord C1 exon
chr2:162194701-162194748
Coord A exon
chr2:162189103-162189172
Coord C2 exon
chr2:162188169-162188363
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTTTTCCTCAAAGCTT
3' ss Score
8.54
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
GCCCAGGCATCCCCATTTCCACCCTTCATGATGGACGCACTGATCAAG
Seq A exon
CTTTATGGTACAAGATGATTCTTCCTCCTCAATTTGACAGATCAAAGAAGTATCCCTTGCTAATTCAAGT
Seq C2 exon
GTATGGTGGTCCCTGCAGTCAGAGTGTAAGGTCTGTATTTGCTGTTAATTGGATATCTTATCTTGCAAGTAAGGAAGGGATGGTCATTGCCTTGGTGGATGGTCGAGGAACAGCTTTCCAAGGTGACAAACTCCTCTATGCAGTGTATCGAAAGCTGGGTGTTTATGAAGTTGAAGACCAGATTACAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.4=29.4)
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.1=78.8)
Main Skipping Isoform:
ENST00000188790fB15473
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGATGGACGCACTGATCA
R:
ACCCAGCTTTCGATACACTGC
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development