BtaEX6009476 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34357932-34359494:+
Coord C1 exon
chr2:34357932-34358030
Coord A exon
chr2:34358489-34358558
Coord C2 exon
chr2:34359300-34359494
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTTGTTTTTCAAGCAT
3' ss Score
7.18
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AAATTAAAATCCTGGAAGACAACAAGGAATTGGAAAATGCTTTGAAAAATATTCAGCTGCCCAAAGAAGAAATTAAGAAACTTAAAGTGGATGATATTA
Seq A exon
CATTGTGGTACAAGATGATTCTTCCTCCTCAGTTTGACAAATCAAAGAAGTATCCCTTGCTAATTCAAGT
Seq C2 exon
GTATGGTGGTCCCTGCAGTCAGAGTGTAAGGTCTATATTCGCTGTTAGTTGGATATCTTATCTTGCAAGTAAGGAAGGGATAGTCATTGCCTTGGTGGATGGTCGAGGAACAGCTTTCCAAGGTGACAAACTCCTGTATGCAGTGTATCGAAAGCTGGGTGTTTATGAAGTTGAGGACCAGATCACAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.1=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGCTGCCCAAAGAAGAA
R:
GAAAGCTGTTCCTCGACCATCC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]