MmuEX6101626 @ mm10
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62517520-62519092:-
Coord C1 exon
chr2:62518994-62519092
Coord A exon
chr2:62518467-62518536
Coord C2 exon
chr2:62517520-62517714
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTGTTTTCAAAGCTT
3' ss Score
8.69
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AAATACAAGTATTAGAAGAAAACAAAGAACTGGAAAATTCTCTGAGAAATATCCAGCTGCCTAAAGTGGAGATTAAGAAGCTCAAAGACGGGGGACTGA
Seq A exon
CTTTCTGGTACAAGATGATTCTGCCTCCTCAGTTTGACAGATCAAAGAAGTACCCTTTGCTAATTCAAGT
Seq C2 exon
GTATGGTGGTCCTTGCAGCCAGAGTGTTAAGTCTGTGTTTGCTGTTAATTGGATAACTTATCTCGCAAGTAAGGAGGGGATAGTCATTGCCCTGGTAGATGGTCGGGGCACTGCTTTCCAAGGTGACAAATTCCTGCATGCCGTGTATCGAAAACTGGGTGTATATGAAGTTGAGGACCAGCTCACAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.0=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTGCCTAAAGTGGAGA
R:
TGTCACCTTGGAAAGCAGTGC
Band lengths:
176-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types