GgaEX6042568 @ galGal4
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20600582-20602857:+
Coord C1 exon
chr7:20600582-20600680
Coord A exon
chr7:20601440-20601509
Coord C2 exon
chr7:20602663-20602857
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTGTCTCTTCTAGCTT
3' ss Score
9.77
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AGCTCAGAATATTAGAGGACAATCAAGAATTGCAGTCTGCTTTGCAAGAGATCATACTGCCAAAAGAAGAAATTAATAAACTTGAAGTGGATGGTATAA
Seq A exon
CTTTGTGGTACAAAATGCTTATACCCCCACAATTTGATAGATCCAAGAAGTACCCACTGCTTATTCAAGT
Seq C2 exon
GTATGGAGGACCATGCAGTCAGAATGTAAAACACACATTTAGCATTAGCTGGATAACGTATCTTGCAAGCAAAGAGGGAATTATTGTTGCTCTAGTAGATGGCAGAGGAACAGCTTATCAAGGTGACAAGATTTTGCATGCAGTTTATCGAAGACTAGGAGTCTATGAAGTTGAGGACCAAATTTCAGCCGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'20-26,'20-25,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.5=80.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCTGCTTTGCAAGAGA
R:
GCTGTTCCTCTGCCATCTACT
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]