DreEX0032068 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51720936-51723676:+
Coord C1 exon
chr9:51720936-51721037
Coord A exon
chr9:51721120-51721189
Coord C2 exon
chr9:51723482-51723676
Length
70 bp
Sequences
Splice sites
3' ss Seq
TATATGATACAATTCTCCAGATC
3' ss Score
5.27
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
AGACTCAGGTCCTTGAGGACAATAAGAAACTGGAAAACATTCTGACTACTGAGCTACTGATGCCAACCAAGAAACGCGGCACTCTGAAGATCGCAGGATTCG
Seq A exon
ATCTCTGGTATCAGATGATGTTCCCACCTAACTTTGACTCCTCCAAAAAGTACCCACTTTTAATTGACGT
Seq C2 exon
GTATGGTGGTCCAGCCAGCCAGAACATAGACTATGTGTTTCGCTTGGAGTGGGCGACGTACCTGTGCAGCACCGAGAGGATCATCGTGGCCAGTTTTGACGGCAGGGGAAGTGGTTTCCAGGGGGATGAAATAATGCACGCCATCTACGAGCGGCTGGGGACGTACGAGGTGGAAGATCAGATCACGGCCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468-'17-20,'17-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.4=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCAACCAAGAAACGC
R:
TCATCCCCCTGGAAACCACTT
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]