RnoEX6017074 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48483943-48485529:-
Coord C1 exon
chr3:48485431-48485529
Coord A exon
chr3:48484902-48484971
Coord C2 exon
chr3:48483943-48484137
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTCTGTTTTCAAAGCTT
3' ss Score
8.24
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AAATACAAGTATTAGAAGAGAACAAAGAACTGGAGAACGCTCTGAGAAACATCCAGCTGCCTGCAGTGGAAATTAAGAAGCTTGAAGACGGTGGAATGA
Seq A exon
CTTTCTGGTACAAGATGATTCTTCCTCCTCAGTTTGACAGATCAAAGAAGTACCCTCTGCTAATTCAAGT
Seq C2 exon
GTATGGTGGTCCCTGCAGCCAGAGTGTAAAGTCTGTATTCTCTGTTAATTGGATAACTTATCTTGCAAGTAAGGAGGGGATAGTCGTTGCCTTGGTAGATGGCCGGGGCACTGCTTTCCAAGGTGACAAATTCCTGCATGCCGTGTATCGAAAGCTGGGTGTGTATGAAGTTGAGGACCAGCTCACAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'22-19,'22-18,24-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.0=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCTGCAGTGGAAATTA
R:
TGTCACCTTGGAAAGCAGTGC
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]