GgaEX6042568 @ galGal3
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22666475-22668750:+
Coord C1 exon
chr7:22666475-22666573
Coord A exon
chr7:22667333-22667402
Coord C2 exon
chr7:22668556-22668750
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTGTCTCTTCTAGCTT
3' ss Score
9.77
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
AGCTCAGAATATTAGAGGACAATCAAGAATTGCAGTCTGCTTTGCAAGAGATCATACTGCCAAAAGAAGAAATTAATAAACTTGAAGTGGATGGTATAA
Seq A exon
CTTTGTGGTACAAAATGCTTATACCCCCACAATTTGATAGATCCAAGAAGTACCCACTGCTTATTCAAGT
Seq C2 exon
GTATGGAGGACCATGCAGTCAGAATGTAAAACACACATTTAGCATTAGCTGGATAACGTATCTTGCAAGCAAAGAGGGAATTATTGTTGCTCTAGTAGATGGCAGAGGAACAGCTTATCAAGGTGACAAGATTTTGCATGCAGTTTATCGAAGACTAGGAGTCTATGAAGTTGAGGACCAAATTTCAGCCGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0032616=Peptidase_S9=PU(25.5=80.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCTGCTTTGCAAGAGA
R:
GCTGTTCCTCTGCCATCTACT
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]