GgaEX0016693 @ galGal4
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20959948-20962966:-
Coord C1 exon
chr7:20962890-20962966
Coord A exon
chr7:20962697-20962798
Coord C2 exon
chr7:20959948-20960066
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCCATAATTTCTGCACAGTAC
3' ss Score
5.53
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
Seq A exon
TACCTTAAAAAGTAGGAGCAGCAGGGCATGAGAGCAGCGGAGATCAAAGAGCTGATGTTGGAAGGAAATAAAGCCATGTAGAATCACAAAAGAGCTTTGCAA
Seq C2 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131_MULTIEX1-4/6=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.390
Domain overlap (PFAM):
C1:
PF128452=TBD=PU(5.4=11.5)
A:
NO
C2:
PF128452=TBD=FE(71.4=100)
Main Inclusion Isoform:
ENSGALT00000033125fB1955
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAGTAAGAAAGTTGTTCCAGA
R:
CAGTTTCAGGTTCTGGCTTTATT
Band lengths:
196-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]