GgaEX0016693 @ galGal3
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
NA
Coordinates
chr7:23047745-23050763:-
Coord C1 exon
chr7:23050687-23050763
Coord A exon
chr7:23050494-23050595
Coord C2 exon
chr7:23047745-23047863
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTCCATAATTTCTGCACAGTAC
3' ss Score
5.53
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
Seq A exon
TACCTTAAAAAGTAGGAGCAGCAGGGCATGAGAGCAGCGGAGATCAAAGAGCTGATGTTGGAAGGAAATAAAGCCATGTAGAATCACAAAAGAGCTTTGCAA
Seq C2 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131-'5-10,'5-8,6-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=1.000 C2=0.341
Domain overlap (PFAM):
C1:
PF083176=Spc7=PD(6.1=26.9),PF0192313=Cob_adeno_trans=PD(9.6=42.3),PF0246513=FliD_N=PD(7.1=26.9),PF103924=COG5=PD(2.8=11.5)
A:
NO
C2:
PF128452=TBD=FE(71.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAGTAAGAAAGTTGTTCCAGA
R:
CAGTTTCAGGTTCTGGCTTTATT
Band lengths:
196-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]