GgaEX0016691 @ galGal3
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
NA
Coordinates
chr7:23047745-23059914:-
Coord C1 exon
chr7:23059802-23059914
Coord A exon
chr7:23050687-23050763
Coord C2 exon
chr7:23047745-23047863
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGTTTTACTTCAAGGTG
3' ss Score
9.26
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTAATATGCATCCCTACATTCTGAGGCATGAAGATATTGAAACCTCCAACTTATCTTTTAGCCAGCTCTCTGAAAAACTGAATGTAGCAAAGCGAAGAGAAAGACTCCTAAAG
Seq A exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
Seq C2 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.151 A=0.260 C2=0.341
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(32.5=100),PF0192313=Cob_adeno_trans=FE(32.5=100),PF0246513=FliD_N=FE(37.8=100),PF103924=COG5=FE(34.6=100)
A:
PF083176=Spc7=PD(6.1=26.9),PF0192313=Cob_adeno_trans=PD(9.6=42.3),PF0246513=FliD_N=PD(7.1=26.9),PF103924=COG5=PD(2.8=11.5)
C2:
PF128452=TBD=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCCTACATTCTGAGGCA
R:
CTGTTTGTTCTCTGGCTAGCA
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event