GgaEX0016691 @ galGal4
Exon Skipping
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20959948-20964385:-
Coord C1 exon
chr7:20964206-20964385
Coord A exon
chr7:20962890-20962966
Coord C2 exon
chr7:20959948-20960066
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGTTTTACTTCAAGGTG
3' ss Score
9.26
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAACAGTTAGAAAATGAGAGCATGAAGTTGAAGCAACTTGAGGACAGAAACAGTGAAAAGGAAAGGAGGCTTATGTCTATTGTTTCCAACCAAGAAGATAAAATACGAACTCTGAAAAACAAATTGAAAGAATTAAGTGACGCCCAAAAGGGTACACAGATGCCAACATACAAAATAGAG
Seq A exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
Seq C2 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131_MULTIEX1-3/6=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.780 A=0.500 C2=0.390
Domain overlap (PFAM):
C1:
PF150351=Rootletin=PD(34.9=88.3)
A:
PF128452=TBD=PU(5.4=11.5)
C2:
PF128452=TBD=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGTGACGCCCAAAAGGGT
R:
CAGTTTCAGGTTCTGGCTTTATT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]