RnoEX0088584 @ rn6
Exon Skipping
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47490257-47505983:+
Coord C1 exon
chr3:47490257-47490375
Coord A exon
chr3:47505224-47505294
Coord C2 exon
chr3:47505868-47505983
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTATTTATCTTCAGGTG
3' ss Score
10.89
5' ss Seq
AAGGTGGTT
5' ss Score
1.96
Exon sequences
Seq C1 exon
ATAACACTTGTGACTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq A exon
GTGAGAAGACAAGAAGTTTCTTCTGGAAAAGAGACCTCAAAGGATCTGAGCATCCCTTTGCATCATGAAAG
Seq C2 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATATGCTTACTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859_MULTIEX1-7/7=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.875 C2=0.025
Domain overlap (PFAM):
C1:
PF067856=UPF0242=PD(17.9=37.5),PF048597=DUF641=PD(22.5=50.0),PF041569=IncA=PD(34.0=80.0)
A:
PF067856=UPF0242=FE(16.4=100),PF128452=TBD=PU(8.8=20.8)
C2:
PF067856=UPF0242=PD(5.7=20.0),PF128452=TBD=FE(68.4=100)
Main Skipping Isoform:
ENSRNOT00000011794fB14758
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAAGACAGTGACAGAAGGA
R:
TGCTTAAGTGGTCTTTCTGTGCT
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]