MmuEX0046268 @ mm9
Exon Skipping
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61465778-61482479:+
Coord C1 exon
chr2:61465778-61465896
Coord A exon
chr2:61481772-61481842
Coord C2 exon
chr2:61482364-61482479
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTTTTTATCCTAAGGTG
3' ss Score
8.49
5' ss Seq
AAGGTCGTT
5' ss Score
1.09
Exon sequences
Seq C1 exon
ATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAG
Seq A exon
GTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGCATCACGAAAG
Seq C2 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTTGCTAGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289_MULTIEX2-2/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=0.875 C2=0.025
Domain overlap (PFAM):
C1:
PF067856=UPF0242=PD(15.4=35.0)
A:
PF128452=TBD=PU(10.9=20.8)
C2:
PF128452=TBD=FE(68.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGAAGACAGTGACAGAAGGA
R:
TGCTTAAGTGATCTTTCTGTGCT
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: