BtaEX6009544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35257667-35276881:-
Coord C1 exon
chr2:35276763-35276881
Coord A exon
chr2:35258420-35258496
Coord C2 exon
chr2:35257667-35257782
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATCATTTTATATCTTTAAGGTA
3' ss Score
7.98
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
ATAACAGTTGTGGCTATGTTCCCCTGCTTGAAGACAGTGAAGCAAGGAAGAATAATTTGACTCTTGATCAGCCTCATGATAAAGCAAAATCAGGAATACCGAGAGAAAAAGAATCAAAG
Seq A exon
GTAAGAAGACAAGAGGTTTCCTCTCCAAGGAAAGAAACTTCACCAAGGAATCTTGGCACTCCTTTATTCCATGAAAG
Seq C2 exon
AAGCTATATAGAGAAGACTTTCCGGGATCTGAAAGAAGAATTTCATAGAATATGCTTGCTAGCTAAAGCACAAAAAGACCACTTAAGCAAACTTAATGTACCATCCGCTGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654-'11-22,'11-19,16-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=0.846 C2=0.250
Domain overlap (PFAM):
C1:
PF125063=DUF3713=PD(14.7=27.5)
A:
PF128452=TBD=PU(8.8=19.2)
C2:
PF128452=TBD=FE(68.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGCTTGAAGACAGTGA
R:
AGTGGTCTTTTTGTGCTTTAGCT
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]