HsaEX0063578 @ hg38
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161204675-161224746:+
Coord C1 exon
chr2:161204675-161204793
Coord A exon
chr2:161223915-161223991
Coord C2 exon
chr2:161224631-161224746
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATCATTTTGTATGTTTAAGGTA
3' ss Score
8.23
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
ATAACAATTATGGCTGTGTTCCTCTGCTTGAAGACAGTGAAACAAGAAAGAATAATTTGACTCTTGATCAGCCACAAGATAAAGTGATTTCAGGAATAGCAAGAGAAAAACTACCAAAG
Seq A exon
GTAAGAAGACAAGAGGTTTCTTCTCCTAGAAAAGAAACTTCAGCAAGGAGTCTTGGCAGTCCTTTGCTCCATGAAAG
Seq C2 exon
GGGTAATATAGAGAAGACTTTCTGGGATCTGAAAGAAGAATTTCATAAAATATGCATGCTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGACACTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560_MULTIEX2-7/11=5-8
Average complexity
S*
Mappability confidence:
88%=100=88%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.899 C2=0.198
Domain overlap (PFAM):
C1:
PF041569=IncA=PD(33.3=64.7),PF125063=DUF3713=PD(24.7=41.2)
A:
PF041569=IncA=PD(10.9=57.7),PF128452=TBD=PU(9.8=19.2)
C2:
PF128452=TBD=FE(68.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGTGTTCCTCTGCTTG
R:
TGCTTTTGCTAGCATGCATATT
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development