GgaINT0048891 @ galGal4
Intron Retention
Gene
ENSGALG00000011131 | TANK
Description
TRAF family member-associated NF-kappa-B activator [Source:RefSeq peptide;Acc:NP_001264800]
Coordinates
chr7:20959948-20962966:-
Coord C1 exon
chr7:20962890-20962966
Coord A exon
chr7:20960067-20962889
Coord C2 exon
chr7:20959948-20960066
Length
2823 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTACAATTTCAATCTTCTAGGGA
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
Seq A exon
GTAAATACTTCTGCAATATTTCTGCAATTTACTTACAATTGTCTTTTCTGCTACTAATTATGACCTCTCATTTTCCATAATTTCTGCACAGTACCTTAAAAAGTAGGAGCAGCAGGGCATGAGAGCAGCGGAGATCAAAGAGCTGATGTTGGAAGGAAATAAAGCCATGTAGAATCACAAAAGAGCTTTGCAAGTATGTACAGATAAGCTGAGAAGAAGAATAGCTGCTGGGTTCAGCAGGAGGTTAAACTCTACGGGATATTACAGTGGACTTTAATACTGGGTTTTGGATAAGCATTAACTCCCTTGCATTAGCTTTCTTCAGAACAGGAACATACAACTGTAATGGATTAGGCTTTGGATCCAGGCTGCCCAGAGAGGCTGTGGATGCCCCATCCCTGCAGGTGTTCAAGGCCATGTTGGATGGTGCCCTGGGCAGCCTGGTCTAGTATTAAATGTGAAGGTTGGTGGCCCTGCCTGCAGCAGAGGGGTGGGAGCTTCATGATCGTTGAGGTCCCTTCTGACCCAAGCCATTCTGTGTTTAACTGATGGCAGCGCAGCAGAGTAGCCTGCTGCACTGCCAGGAGGAGGTCTGATAGTCAGTGTGAAGAAATAATTCTTGGCCCAGTTCATCCTAAATGAGAGGGCTTGAAACCAGGTGTGTCTGTAAACTGAAACCATCCAACCTTGACAATGACCAAGGGACCAAAAGCAGTATATTTCCTAAGCAAGCATTCCTCCTTCAGACAATGTTTTGAGAAAAATATTGACAATACTCTTAGGTTTGCACTTTTCACGAGATAGGCAATAACACTGCTTTTAACAACCTTTGCTAATGTCAAGCAGAATATTCTTGAAGATGAGAATTGGAGAGAATTAGGGGAAAAAGTATTGTGAATTCTTGCTGTCTTATACTTTTGCCTAGGCATATGATTTTGGCCATGCTCTGACACAGACTAGGTGAACCAGATGGATCTTTAGACTGAATCATTACTACAGTGTAATAAGAAAAGGGAGATAAGACTATGATGAAGACTTTATTGTCTTTATTTATGTATATCTAAAGAATAAAAACTTCTGCCTGTCTCCCTCTCAGATAACTCCCTTACTCTGCACTGGTGAGATCTCACTTGAAGCACATGTCCAGATGTGGAGTCCTCAGCACAGGGAAGATGTAGACCTGTTAAAGTGCAGAGGGCCACAAAAATGATCCAAGGGATGAAACAACTTCCCGATGAGGACAGGCTAAGAGAGCTGAGGCTGTTCAGCCTGGAGAAGAGAAAGTTCCAGGGAGACCTGAGAGCAGCCTTTCTAAGGAGGGGGCTATAAGAAGGAGGACAAGGGACTCTTTATTGTTGTGATAGGGCAAGAGGAAATTATTTTAAAGTAAAAGTGGGGAGATTCCAACTGAATATAAGGAAGAAGTTTTTTATGATAAGGGTGGTTAGGCACTGGCACAAGTTGCCCAGAGGTGGATGCCCCATCCTTGGAGAGACTCAAGGCCAGGCAGGACCATGCTCTGAGCACCTGATGGAGCTGTAGGTGTCTCTGCTCATTGCAGGAGAGTTGAACTAGATGACTTTTAAAGGTCTCTTCCAACTCAGAAGATTCTGTGATTCTTATTTTACATTTTTTCTGTGGAAAGATTATGTTATCATCAATGTCTAGCAAATGAAAATTGGTTCATCTAATCATATGTATATTTTAATGCTCCAATTAAAAATGTGTTATGAGAATTTTCCCATTTCTTATTTATTGAAACACCTGAAAAAATAGTCAGAACTTTAACTTCTTCTGTAGGTGTTTCTTTTTTGAAATGACGTCCACGTAGACATCTGTCTTCAAAAAGAGAAGTATAGGGGGAGTAAGATCACAACTCATGATGCTCCTGATTGCTGTATGAATAAGCAATAGAAAGGAAAACAATGTATCGAGGTAAAGAGAAACAACCCCTCTGAGCTTTTTTTGAGACAAAGATGCAAAATTCAGATTGTCACAAGCTTAACTTTTTCATATTTAAAGCCAATTTTACAATATCTGTGATATTATGCTTAGAAATATAAAGTATGCAGCAAATTTATCAAAATTTCACAATGGAATTTTTTCTATAATATAATGTCTGGTGCCTTAGGGAAAAAAATCTCAAATAAGAATGAAGAGCAACGTCTACCAGTCTTAGTGCAAATAACTAAATTTTGGATGATCATATGATCTAGAAAAGATGTAATAAAAAAAATACTCCTCAAAAAAAAAAAAAAAAAAAGAAGAGAAGAGAAGAGAAAAAAAAGAAAGTTGAGTCATAAGGCAGAGGAATGAGTTTACTAGCATACCTTCAAGATGTGAGGTAGACAGAGAAGGAAGGAGCAGTAACGAACACTTGTGTGTTCCTTCTCCTGAGAAGTCTGAAGCCCACAAAAAAAAACAACAACAACAAAAAAAAACAATTAATGTTCACAGCAGCAGCACCCTATTTTGCCTAGAACGGAATATAAGCAGTGTCTTGCACAAGCTGTTCCACTGATACCTGAGGAAACTGGAAAGAAAGTGTAAAGACTGGATTGCCTCTGGGTCCTCTCAGAGTCAGGCCCTAGGCTTGAATGTGTGTCTATATTATGACTAACCAGCTCCTTGACTATATTGTTTTTCCCTTTTCTGCTTGCTTTTTTTCTGAGAACAGAAATGTATGTACATATGTTGAAGAACAAGGTATCCAAGAAAAGTAGCTTACACTATTGTTTTTCTCTGGTTTGTGGGGGTGACTACAATAAAGGTCACAACAAGCTGAATTGATTGAGGGTCTAATTTACAATTTCAATCTTCTAG
Seq C2 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131:ENSGALT00000033125:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF128452=TBD=PU(5.4=11.5)
A:
NA
C2:
PF128452=TBD=FE(71.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]