GgaINT0048891 @ galGal3
Intron Retention
Gene
ENSGALG00000011131 | TANK
Description
NA
Coordinates
chr7:23047745-23050763:-
Coord C1 exon
chr7:23050687-23050763
Coord A exon
chr7:23047864-23050686
Coord C2 exon
chr7:23047745-23047863
Length
2823 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTACAATTTCAATCTTCTAGGGA
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
Seq A exon
GTAAATACTTCTGCAATATTTCTGCAATTTACTTACAATTGTCTTTTCTGCTACTAATTATGACCTCTCATTTTCCATAATTTCTGCACAGTACCTTAAAAAGTAGGAGCAGCAGGGCATGAGAGCAGCGGAGATCAAAGAGCTGATGTTGGAAGGAAATAAAGCCATGTAGAATCACAAAAGAGCTTTGCAAGTATGTACAGATAAGCTGAGAAGAAGAATAGCTGCTGGGTTCAGCAGGAGGTTAAACTCTACGGGATATTACAGTGGACTTTAATACTGGGTTTTGGATAAGCATTAACTCCCTTGCATTAGCTTTCTTCAGAACAGGAACATACAACTGTAATGGATTAGGCTTTGGATCCAGGCTGCCCAGAGAGGCTGTGGATGCCCCATCCCTGCAGGTGTTCAAGGCCATGTTGGATGGTGCCCTGGGCAGCCTGGTCTAGTATTAAATGTGAAGGTTGGTGGCCCTGCCTGCAGCAGAGGGGTGGGAGCTTCATGATCGTTGAGGTCCCTTCTGACCCAAGCCATTCTGTGTTTAACTGATGGCAGCGCAGCAGAGTAGCCTGCTGCACTGCCAGGAGGAGGTCTGATAGTCAGTGTGAAGAAATAATTCTTGGCCCAGTTCATCCTAAATGAGAGGGCTTGAAACCAGGTGTGTCTGTAAACTGAAACCATCCAACCTTGACAATGACCAAGGGACCAAAAGCAGTATATTTCCTAAGCAAGCATTCCTCCTTCAGACAATGTTTTGAGAAAAATATTGACAATACTCTTAGGTTTGCACTTTTCACGAGATAGGCAATAACACTGCTTTTAACAACCTTTGCTAATGTCAAGCAGAATATTCTTGAAGATGAGAATTGGAGAGAATTAGGGGAAAAAGTATTGTGAATTCTTGCTGTCTTATACTTTTGCCTAGGCATATGATTTTGGCCATGCTCTGACACAGACTAGGTGAACCAGATGGATCTTTAGACTGAATCATTACTACAGTGTAATAAGAAAAGGGAGATAAGACTATGATGAAGACTTTATTGTCTTTATTTATGTATATCTAAAGAATAAAAACTTCTGCCTGTCTCCCTCTCAGATAACTCCCTTACTCTGCACTGGTGAGATCTCACTTGAAGCACATGTCCAGATGTGGAGTCCTCAGCACAGGGAAGATGTAGACCTGTTAAAGTGCAGAGGGCCACAAAAATGATCCAAGGGATGAAACAACTTCCCGATGAGGACAGGCTAAGAGAGCTGAGGCTGTTCAGCCTGGAGAAGAGAAAGTTCCAGGGAGACCTGAGAGCAGCCTTTCTAAGGAGGGGGCTATAAGAAGGAGGACAAGGGACTCTTTATTGTTGTGATAGGGCAAGAGGAAATTATTTTAAAGTAAAAGTGGGGAGATTCCAACTGAATATAAGGAAGAAGTTTTTTATGATAAGGGTGGTTAGGCACTGGCACAAGTTGCCCAGAGGTGGATGCCCCATCCTTGGAGAGACTCAAGGCCAGGCAGGACCATGCTCTGAGCACCTGATGGAGCTGTAGGTGTCTCTGCTCATTGCAGGAGAGTTGAACTAGATGACTTTTAAAGGTCTCTTCCAACTCAGAAGATTCTGTGATTCTTATTTTACATTTTTTCTGTGGAAAGATTATGTTATCATCAATGTCTAGCAAATGAAAATTGGTTCATCTAATCATATGTATATTTTAATGCTCCAATTAAAAATGTGTTATGAGAATTTTCCCATTTCTTATTTATTGAAACACCTGAAAAAATAGTCAGAACTTTAACTTCTTCTGTAGGTGTTTCTTTTTTGAAATGACGTCCACGTAGACATCTGTCTTCAAAAAGAGAAGTATAGGGGGAGTAAGATCACAACTCATGATGCTCCTGATTGCTGTATGAATAAGCAATAGAAAGGAAAACAATGTATCGAGGTAAAGAGAAACAACCCCTCTGAGCTTTTTTTGAGACAAAGATGCAAAATTCAGATTGTCACAAGCTTAACTTTTTCATATTTAAAGCCAATTTTACAATATCTGTGATATTATGCTTAGAAATATAAAGTATGCAGCAAATTTATCAAAATTTCACAATGGAATTTTTTCTATAATATAATGTCTGGTGCCTTAGGGAAAAAAATCTCAAATAAGAATGAAGAGCAACGTCTACCAGTCTTAGTGCAAATAACTAAATTTTGGATGATCATATGATCTAGAAAAGATGTAATAAAAAAAATACTCCTCAAAAAAAAAAAAAAAAAAAGAAGAGAAGAGAAGAGAAAAAAAAGAAAGTTGAGTCATAAGGCAGAGGAATGAGTTTACTAGCATACCTTCAAGATGTGAGGTAGACAGAGAAGGAAGGAGCAGTAACGAACACTTGTGTGTTCCTTCTCCTGAGAAGTCTGAAGCCCACAAAAAAAAACAACAACAACAAAAAAAAACAATTAATGTTCACAGCAGCAGCACCCTATTTTGCCTAGAACGGAATATAAGCAGTGTCTTGCACAAGCTGTTCCACTGATACCTGAGGAAACTGGAAAGAAAGTGTAAAGACTGGATTGCCTCTGGGTCCTCTCAGAGTCAGGCCCTAGGCTTGAATGTGTGTCTATATTATGACTAACCAGCTCCTTGACTATATTGTTTTTCCCTTTTCTGCTTGCTTTTTTTCTGAGAACAGAAATGTATGTACATATGTTGAAGAACAAGGTATCCAAGAAAAGTAGCTTACACTATTGTTTTTCTCTGGTTTGTGGGGGTGACTACAATAAAGGTCACAACAAGCTGAATTGATTGAGGGTCTAATTTACAATTTCAATCTTCTAG
Seq C2 exon
GGAGAATCTGGAGACTATTTTTCAGGAGATGAAAGAAGAGTGTCATCGAATATGTATGCTAGCCAGAGAACAAACAGACCAACTGAGTAAATTTAAAATAAAGCCAGAACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131:ENSGALT00000033125:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=NA C2=0.341
Domain overlap (PFAM):
C1:
PF083176=Spc7=PD(6.1=26.9),PF0192313=Cob_adeno_trans=PD(9.6=42.3),PF0246513=FliD_N=PD(7.1=26.9),PF103924=COG5=PD(2.8=11.5)
A:
NA
C2:
PF128452=TBD=FE(71.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]