BtaINT0145063 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35257667-35258496:-
Coord C1 exon
chr2:35258420-35258496
Coord A exon
chr2:35257783-35258419
Coord C2 exon
chr2:35257667-35257782
Length
637 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
AAATGTTAATTTATTTTTAGAAG
3' ss Score
4.31
Exon sequences
Seq C1 exon
GTAAGAAGACAAGAGGTTTCCTCTCCAAGGAAAGAAACTTCACCAAGGAATCTTGGCACTCCTTTATTCCATGAAAG
Seq A exon
GTAGTTCTGTATCCTTCTTTGCCCACTCTACAAATTATAAATATTGAAATACAAGTTTATTTACATACTTAAGTTTTTAGCAATTGTAAGAAACAGCAGCCTTTTAAAACCAGAAGAGATGTACTCAAGGCTTCTCCATGTTAAAATGACCTAAATAAGTCATATAGTTAATATCACAGATGCTCTAAAAGCTGAACTCTCTGAAGTTCTCCTATTTCAGTAGAGTAAGTATTATGGCCACATCATTCTATATGGATAGATCTTTAATCTTTTCAATGTAAAAAATAAAAAATTAAGTTTTTTCTGTTTAAAATATCTACAGAGGACAAAAAGGCAATACACTGCAGCTTCTAATGTAAGAATGAGACAGCCAGCATAAGTGAAATATAGGAATCAGGAGACGTGCTAGTTTGTGCAATATGTATGTATTAGAACTTTATCACTCACTTTGTGCCTGGCTTGCCAAGTATTAAAGTTGTTTTAGGAAATATTGTCTAGGAATTTAAAATGATATTTTTAAATTTGAACCTTTCAGTAATTATTTTGTGGTAGAGTCAAAGGTGCTTGTAAATTCAATCATGATTTTTTAAATTTGAAGATATAGTCTTTACATTTTAAAATGTTAATTTATTTTTAG
Seq C2 exon
AAGCTATATAGAGAAGACTTTCCGGGATCTGAAAGAAGAATTTCATAGAATATGCTTGCTAGCTAAAGCACAAAAAGACCACTTAAGCAAACTTAATGTACCATCCGCTGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654:ENSBTAT00000046172:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF128452=TBD=PU(8.8=19.2)
A:
NA
C2:
PF128452=TBD=FE(68.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]