HsaINT0163647 @ hg38
Intron Retention
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161223915-161224746:+
Coord C1 exon
chr2:161223915-161223991
Coord A exon
chr2:161223992-161224630
Coord C2 exon
chr2:161224631-161224746
Length
639 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
ATGTTGATTTTTTTTTTTAGGGG
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTAAGAAGACAAGAGGTTTCTTCTCCTAGAAAAGAAACTTCAGCAAGGAGTCTTGGCAGTCCTTTGCTCCATGAAAG
Seq A exon
GTAGTTCTACATCCTTTTTTCTCAACTCTTAAAAATTATCAATACTGAAATATATTTTATATTTGTTTTTTTTAAGCTTTAACAATTGCAAAAAAAATAGCCTTTTAGAATAAGTGGAAGTGACCAACCCCAGAATCCTACATGTTAAAGATGACCTAAACAAGTCATGCAGTTAATAGCAGAGCTGAATCTAAAACTTGAATTCTGTAAAGCTCTACTATTTCAATAGACCAAGTGTTAAGGTCGTATTTCTTTATATGGATGGCTCCTAATGTGAACCTTACCAAAATGAGGAATATTTAATATTCTATTTAAGATATTTGCAGAGAACAAAAGTCAATGCATTGAAATTTCTAATGTGAGAATAAGACAGCCAACATTAGTGTATATATGAATAAGTAGATATGCTAGACTATACTATATTTATGTATTAAAACTTTTAATTTATCACTTACTTTGTGCCTGGCCCTCTACAAACACAAGCTGATTTTGGGGACATTGTTTAGGAATTTAAAATAATTTTTTTTTACTTTTAAATAATTATTTTGTGGCACATAAAATGGTACTACATAAGTTTGATTATTTAAAAAACTTGGAAGTTATAGCTTTACATTTTAAAATGTTGATTTTTTTTTTTAG
Seq C2 exon
GGGTAATATAGAGAAGACTTTCTGGGATCTGAAAGAAGAATTTCATAAAATATGCATGCTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGACACTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560:ENST00000259075:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.899 A=NA C2=0.198
Domain overlap (PFAM):
C1:
PF041569=IncA=PD(10.9=57.7),PF128452=TBD=PU(9.8=19.2)
A:
NA
C2:
PF128452=TBD=FE(68.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACAAGAGGTTTCTTCTCCT
R:
CAGTTGCAGTGTCTGGTATATTAAGT
Band lengths:
190-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains