MmuINT0156888 @ mm9
Intron Retention
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61481772-61482479:+
Coord C1 exon
chr2:61481772-61481842
Coord A exon
chr2:61481843-61482363
Coord C2 exon
chr2:61482364-61482479
Length
521 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGTT
5' ss Score
1.09
3' ss Seq
AAATATTGATTTGTTTTTAGGGA
3' ss Score
6.6
Exon sequences
Seq C1 exon
GTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGCATCACGAAAG
Seq A exon
GTCGTTCTAGAGCCTTCTTTGCCAACCCAAAATGTATAAATATTACAATATGCAATATTTTGCACAGTTTAAGACTTTTAACAATTATTAAAGAAAAATAGTTGATCTTCATTACTGAGTAGACCCGCGTGTGGAAATGAGCTAGCTGTATCACGTGGCTGCAGGTACCCGAGATGCAAAGCTCTGACCTCTGCAGGCTCCCCGTCTCCACAGCCTTGTATTGTAACTGTATTGTTTGGCACGGGTGACTCCTGATATGAACCAGAGTGAGGAGTAATTACTACTCTAGTTATGATGCTTACAGAGAACTGACGCTTGTAGAACAAGTATGAATGGGGTGCATTTATGAACTAGAACTTGAATTGTTTGAGGATATTTTTTTCGAAGTTAAATTTTATTTTTAATGTTTCACTTTCCAACAATTCTGTGGTCCATAAAAGCTATGCTATATATATTTAATTACAATGTAAAATCATTTGAAGGTATAACGTTAACATTTTAAAATATTGATTTGTTTTTAG
Seq C2 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTTGCTAGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-Tank:NM_011529:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF128452=TBD=PU(10.9=20.8)
A:
NA
C2:
PF128452=TBD=FE(68.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: